Scheidel, J; Amstein, L; Ackermann, J; Dikic, I; Koch, I; 
In Silico Perturbations of the Antibacterial Autophagy Pathway
Keystone Symposia: Autophagy Network Integration in Health and Disease2017, Copper Mountain, Colorado

Leonie Amstein, Jennifer Scheidel, Jörg Ackermann, Ina Koch 
Manatee invariants - a mathematical concept to find all complete pathways in signaling networks
Frankfurt Conference on Ubiquitin and Autophagy2016, Frankfurt am Main

Schweizer, B; Scheidel, J; Amstein, L; Ackermann, J; Koch, I;
isiKnock: a tool for in silico knockouts based on Petri net models
ISGSB - International Study Group for Systems Biology, Jena, 2016

Scheidel, J; Amstein, L; Schweizer, B; Ackermann, J; Koch, I;
In silico knockout experiments based on Petri net models
ECCB 2016 – 15th European Conference on Computational Biology, The Hague, The Netherlands, 2016

Scheidel, J; Amstein, L; Ackermann, J; Dikic, I; Koch, I;
Mathematical Model of Salmonella Replication
Frankfurt conference on ubiquitin and autophagy – Quality control in life processes, Frankfurt am Main, 2016

Nasiri, L; Scheidel, J; Ackermann, J; Schaefer, L; Koch, I;
Mathematical modeling of SHARPIN-dependent signaling pathways
Frankfurt conference on ubiquitin and autophagy – Quality control in life processes, Frankfurt am Main, 2016

Rieser, J; Scheidel, J; Amstein, L; Ackermann, J; Behrends, C; Dikic, I; Koch, I;
Network Analysis of the Ubiquitinome of Salmonella-Infected Cells
Frankfurt conference on ubiquitin and autophagy – Quality control in life processes, Frankfurt am Main, 2016

Rieser, J; Scheidel, J; Amstein, L; Ackermann, J; Behrends, C; Dikic, I; Koch, I;
Network Analysis of the Ubiquitinome of Salmonella-Infected Cells
German Conference on Bioinformatics, Berlin, 2016

Heiko Giese, Jörg Ackermann, Ilka Wittig, Ulrich Brandt, and Ina Koch
PULSAR: a software for batch pre-processing of complexome profiling data
German Conference of Bioinformatics, Berlin, 2016

Scheidel, J; Amstein, L; Dikic, I; Koch, I;
Computational Network Analysis of Autophagic Capturing of the Intracellular Pathogen Salmonella
EMBO Conference, Ubiquitin and Ub-like modifiers – From molecular mechanisms to human diseases. Cavtat, Croatia, 2015

Scheidel, J; Amstein, L; Dikic, I; Koch, I; 
Petri net based description and analysis of the autophagy of the bacterial pathogen Salmonella
FEBS JOURNAL2015, Volume 282, page 303

Amstein, L; Scheidel, J; Fulda, S; Dikic, I; Koch, I; 
Modeling TNFR1 signal transduction using Petri net formalism
FEBS JOURNAL2015, Volume 282, page 187

Martin Wegner, Melanie Laßek, Jens Weingarten, Walter Volknandt, Ina Koch, and Jörg Ackermann
APP is a functional regulator at the presynaptic active zone
German Conference of Bioinformatics, Dortmund2015, Poster abstract book, page 25, doi:peerj.preprints.1350v2

Hendrik Schäfer, Tim Schäfer, Joerg Ackermann, Sylvia Hartmann, Claudia Döring, Martin-Leo Hansmann, and Ina Koch
Graph-based analysis of CD30+ cell distributions in Hodgkin Lymphoma
German Conference of Bioinformatics, Dortmund2015, Poster abstract book, page 31, doi:peerj.preprints.1350v2