Nurhassen I; Wolf JN; Ackermann J; Haapanen OA; Sharma V; Koch I;
Graph-based visualization of structural topologies of MD simulation data
German Conference on Bioinformatics, 2020, Frankfurt am Main | PDF
Scharf S; Wurzel P; Ackermann J; Hansmann ML; Koch I;
Steps towards a virtual lymph node
German Conference on Bioinformatics, 2020, Frankfurt am Main | PDF
Nover N; Keßler M; Ackermann J; Koch I;
Predicting Modifiability of Redox-Sensitive Cysteines with Supervised Machine Learning Hidden Markov Models
German Conference on Bioinformatics, 2020, Frankfurt am Main | PDF
Zhdanovich Y; Ackermann J; Koch I; Bernatz S; Mandel P; Chun FKH; Köllermann J; Rosbach N; Vogl T; Wild PJ;
Prediction of clinically significant prostate cancer based on magnetic resonance images and tissue microarrays applying machine learning approaches
German Conference on Bioinformatics, 2020, Frankfurt am Main | PDF
Moesser M; Ackermann J; Hamann A; Osiewacz H; Koch I;
Kinetic Model of AMPK-Mediated Autophagy Initiation
German Conference on Bioinformatics, 2020, Frankfurt am Main | PDF
Zunker M; Wolf JN; Koch I;
Representation of RNA-Protein Complexes in Topology Graphs
German Conference on Bioinformatics, 2020, Frankfurt am Main | PDF
Bergmann T; Wurzel P; Ackermann J; Hansmann ML; Koch I;
Bioinformatic analysis of morphological differences in tissue images of Hodgkin lymphoma patients regarding new and recurrent cases
German Conference on Bioinformatics, 2020, Frankfurt am Main | PDF
Wolf JN; Ackermann J; Koch I;
Graph-theoretical analysis of the topology of large protein complexes based on cryo-EM data
German Conference on Bioinformatics, 2020, Frankfurt am Main | PDF
Wolf JN; Keßler M; Ackermann J; Koch I;
Topological description of large protein complexes based on cryo-EM data using graph theory
German Conference on Bioinformatics, 2019, Heidelberg
Wolf JN; Schäfer, T; Schmitt, M; Ackermann, J; Koch, I;
Multi-scale modeling of cryo-EM protein structures using graph theory
Mosbacher Kolloquium, 2019, Mosbach
Scheidel, J; Amstein, L; Ackermann, J; Dikic, I; Koch, I;
In Silico Perturbations of the Antibacterial Autophagy Pathway
Keystone Symposia: Autophagy Network Integration in Health and Disease, 2017, Copper Mountain, Colorado
Leonie Amstein, Jennifer Scheidel, Jörg Ackermann, Ina Koch
Manatee invariants - a mathematical concept to find all complete pathways in signaling networks
Frankfurt Conference on Ubiquitin and Autophagy, 2016, Frankfurt am Main
Schweizer, B; Scheidel, J; Amstein, L; Ackermann, J; Koch, I;
isiKnock: a tool for in silico knockouts based on Petri net models
ISGSB - International Study Group for Systems Biology, Jena, 2016
Scheidel, J; Amstein, L; Schweizer, B; Ackermann, J; Koch, I;
In silico knockout experiments based on Petri net models
ECCB 2016 – 15th European Conference on Computational Biology, The Hague, The Netherlands, 2016
Scheidel, J; Amstein, L; Ackermann, J; Dikic, I; Koch, I;
Mathematical Model of Salmonella Replication
Frankfurt conference on ubiquitin and autophagy – Quality control in life processes, Frankfurt am Main, 2016
Nasiri, L; Scheidel, J; Ackermann, J; Schaefer, L; Koch, I;
Mathematical modeling of SHARPIN-dependent signaling pathways
Frankfurt conference on ubiquitin and autophagy – Quality control in life processes, Frankfurt am Main, 2016
Rieser, J; Scheidel, J; Amstein, L; Ackermann, J; Behrends, C; Dikic, I; Koch, I;
Network Analysis of the Ubiquitinome of Salmonella-Infected Cells
Frankfurt conference on ubiquitin and autophagy – Quality control in life processes, Frankfurt am Main, 2016
Rieser, J; Scheidel, J; Amstein, L; Ackermann, J; Behrends, C; Dikic, I; Koch, I;
Network Analysis of the Ubiquitinome of Salmonella-Infected Cells
German Conference on Bioinformatics, Berlin, 2016
Heiko Giese, Jörg Ackermann, Ilka Wittig, Ulrich Brandt, and Ina Koch
PULSAR: a software for batch pre-processing of complexome profiling data
German Conference of Bioinformatics, Berlin, 2016
Scheidel, J; Amstein, L; Dikic, I; Koch, I;
Computational Network Analysis of Autophagic Capturing of the Intracellular Pathogen Salmonella
EMBO Conference, Ubiquitin and Ub-like modifiers – From molecular mechanisms to human diseases. Cavtat, Croatia, 2015
Scheidel, J; Amstein, L; Dikic, I; Koch, I;
Petri net based description and analysis of the autophagy of the bacterial pathogen Salmonella
FEBS JOURNAL, 2015, Volume 282, page 303
Amstein, L; Scheidel, J; Fulda, S; Dikic, I; Koch, I;
Modeling TNFR1 signal transduction using Petri net formalism
FEBS JOURNAL, 2015, Volume 282, page 187
Martin Wegner, Melanie Laßek, Jens Weingarten, Walter Volknandt, Ina Koch, and Jörg Ackermann
APP is a functional regulator at the presynaptic active zone
German Conference of Bioinformatics, Dortmund, 2015, Poster abstract book, page 25, doi:peerj.preprints.1350v2
Hendrik Schäfer, Tim Schäfer, Joerg Ackermann, Sylvia Hartmann, Claudia Döring, Martin-Leo Hansmann, and Ina Koch
Graph-based analysis of CD30+ cell distributions in Hodgkin Lymphoma
German Conference of Bioinformatics, Dortmund, 2015, Poster abstract book, page 31, doi:peerj.preprints.1350v2