130. Deußner-Helfmann, N., Auer, A., Strauss, M., Malkusch, S., Dietz, M., Barth, H.-D., Jungmann, R. and Heilemann, M.# (2018). Correlative Single-Molecule FRET and DNA-PAINT Imaging. Nano Lett., DOI: 10.1021/acs.nanolett.8b02185.

129. Gao, Y.; Spahn, C.; Heilemann, M.# & Kenney, L. J. (2018). The Pearling Transition Provides Evidence of Force-Driven Endosomal Tubulation during Salmonella Infection. mBio, 9(3), e01083-18.

128. Oppelt, A.; Kaschek, D.; Huppelschoten, S.; Sison-Young, R.; Zhang, F.; Buck-Wiese, M.; Herrmann, F.; Malkusch, S.; Krüger, C. L.; Meub, M.; Merkt, B.; Zimmermann, L.; Schofield, A.; Jones, R. P; Malik, H.; Schilling, M.; Heilemann, M.; van de Water, B.; Goldring, C. E.; Park, B. K.;Timmer, T. & Klingmüller, U. (2018). Model-based identification of TNFα-induced IKKβ- and IκBα-mediated regulation of NFκB signal transduction as a tool to quantify the impact of drug-induced liver injury compounds. Nature Systems Biology and Applications, 4, 23.

127. Harwardt, M.-L. I.E., Dietz, M., Heilemann, M.# & Wohland, T. (2018). SPT and Imaging FCS Provide Complementary Information on the Dynamics of Plasma Membrane Molecules. Biophysical Journal, 114(10), pp.2432-2443.

126. Venkataramani, V., Kardorff, M., Herrmannsdörfer, F., Wieneke, R., Klein, A., Tampé, R., Heilemann, M.# & Kuner, T. (2018). Enhanced labeling density and whole-cell 3D dSTORM imaging by repetitive labeling of target proteins. Sci Rep. 8 (1), 5507.

125. Gatterdam, K., Joest, E. F., Dietz, M. S., Heilemann, M. & Tampé, R. (2018) Super-chelators for advanced protein labeling in living cells. Angew Chemie. Angewandte Chemie, 57(20), 5620-5625.

124.  Poppelreuther, M.; Sander, S.; Minden, F.; Dietz, M. S.; Exner, T.; Du, C.; Zhang, I.; Ehehalt, F.; Knüppel, L.; Domschke, S.; Badenhop, A.; Staudacher, S.; Ehehalt, R.; Stremmel, W.; Thiele, C.; Heilemann, M. & Füllekrug, J. (2018). The metabolic capacity of lipid droplet localized acyl-CoA synthetase 3 is not sufficient to support local triglyceride synthesis independent of the endoplasmic reticulum in A431 cells. BBA Mol. Cell Biol Lipids. 1863, 614-624.

123.  Vlijm, R.; Li, X.; Panic, M.; Rüthnick, D.; Hata, S.; Herrmannsdörfer, F.; Kuner, T.; Heilemann, M.; Engelhardt, J.; Hell, S. W. & Schiebel, E. (2018). STED nanoscopy of the centrosome linker reveals a CEP68-organised, periodic rootletin network anchored to a C-Nap1 ring at centrioles. PNAS. 115 (10), E2246-E2253.


122.  Krüger, C., Zeuner, M., Cottrell, G., Widera, D. & Heilemann, M. (2017). Quantitative single-molecule imaging of TLR4 reveals ligand-specific receptor dimerization. Science Signaling, 10(503), eaan1308.

121.  Spahn, C., Glaesmann, M., Gao, Y., Foo, Y. H., Lampe, M., Kenney, L. J. & Heilemann, M. (2017) Sequential super-resolution imaging of bacterial regulatory proteins, the nucleoid and the cell membrane in single, fixed E. coli cells. Methods Mol Biol. 1624: 269-289.

120.  Stark, T., Lieblein, T., Pohland, M., Kalden, E., Freund, P., Zangl, R., Grewal, R., Heilemann, M., Eckert, G.P., Morgner, N. & Göbel, M.W. (2017) Peptidomimetics that inhibit and partially reverse the aggregation of Aβ1-42. Biochemistry. 56 (36), 4840–4849.

119.  Harwardt, M.-L., Young, P., Bleymüller, W. M., Meyer, T., Karathanasis, C., Niemann, H. H., Heilemann, M. & Dietz, M. S. (2017) Membrane dynamics of resting and InlB-bound MET receptor tyrosine kinase studied by single-molecule tracking. FEBS Open Bio, 7(9), 1422-1440.

118.  Klötzner, D.-P., Klehs, K., Heilemann, M. & Heckel, A. (2017) A new photoactivatable near-infrared-emitting QCy7 fluorophore for single-molecule super-resolution microscopy. Chemical Communications, 53(71), 9874-9877.

117.  Polajnar, M., Dietz, M. S., Heilemann, M. & Behrends, C. (2017) Expanding the host cell ubiquitylation machinery targeting cytosolic Salmonella. EMBO Reports, 18(9), 1572-1585.

116.    Grumati, P.; Morozzi, G; Hölper, S.; Mari, M.; Harwardt, M.-L.; Yan, R.; Müller, S.; Reggiori, F.; Heilemann, M. & Dikic, I. (2017). Full length RTN3 regulates turnover of tubular endoplasmic reticulum via selective autophagy.Elife, 15(6), e25555.

115.    van Wijk, S.; Fricke, F.; Herhaus, L.; Gupta, J.; Hötte, K.; Pampaloni, F.; Grumati, P.; Kaulich, M.; Sou, Y.; Komatsu, M.; Greten, F.; Simone, F.; Heilemann, M. & Dikic, I. (2017). Linear ubiquitination of cytosolic SalmonellaTyphimurium activates NF-κB and restricts bacterial proliferation. Nature Microbiology, 2, 17066.

114.    Sauer, M.; Heilemann, M. (2017). , Single-Molecule Localization Microscopy in Eukaryotes. Chemical Reviews, 117(11), 7478-7509.

113.    Karathanasis, C.; Fricke, F.; Hummer, G. & Heilemann, M.# (2017). Molecule counts in localization microscopy with organic fluorophores. ChemPhysChem, 18(8), 942-948.

112.    Warhaut, S.; Mertinkus, K. R.; Höllthaler, P.; Fürtig, B.; Heilemann, M.; Hengesbach, M. & Schwalbe, H. (2017). Ligand-modulated folding of the full-length adenine riboswitch probed by NMR and single-molecule FRET spectroscopy. Nucleic Acids Research, 45(9), 5512-5522.

111.  Krüger, C., Fricke, F., Karathanasis, C., Dietz, M. S., Malkusch, S., Hummer, G. & Heilemann, M. (2017) Molecular counting of membrane receptor subunits with single-molecule localization microscopy. Proc SPIE. 10071, 100710K.

110.    Herrmannsdörfer, F.; Flottmann, B.; Nanguneri, S.; Venkataramani, V.; Horstmann, H.; Kuner, T. & Heilemann, M.#  (2017). 3D dSTORM imaging of fixed brain tissue. Methods Mol Biol. 1538:169-184.



109.   Diekmann, R.; Wolfson, D. L.; Spahn, C.; Heilemann, M.; Schüttpelz, M. & Huser, T. (2016) Nanoscopy of bacterial cells immobilized by holographic optical tweezers.Nat Commun. 7:13711. doi:10.1038/ncomms13711.

108.   Spahn, C.; Herrmannsdörfer, F.; Kuner, T. & Heilemann, M.# (2016). Cluster analysis through temporal subsampling. Nat Methods 13(12):963–964. doi:10.1038/nmeth.4065.

107.   Hummer, G.; Fricke, F. & Heilemann, M. (2016) Model-independent counting of molecules in single-molecule localization microscopy. Mol Biol Cell. 27(22):3637-3644.

106.   Zeuner, M.-T.; Krüger, C. L.; Volk, K.; Bieback, K.; Cottrell, G. S.; Heilemann, M. & Widera, D. (2016). Ligand-Biased Regulation of Inflammatory Balance is an Essential Feature of TLR4 in Glioma Cells. Biochim Biophys Acta. 1863(12):3084-3095. doi: 10.1016/j.bbamcr.2016.09.016.

105.   Fricke, F.; Beaudouin, J.; Malkusch, S.; Eils, R. & Heilemann, M.# (2016). Quantitative single-molecule localization microscopy (qSMLM) of membrane proteins based on kinetic analysis of fluorophore blinking cycles. In: Erfle H. (eds) Super-Resolution Microscopy. Methods in Molecular Biology, vol 1663. Humana Press, New York, NY.

104.   Malkusch, S. and Heilemann, M. (2016). Extracting quantitative information from single Molecule super-resolution imaging data with LAMA – LocAlization Microscopy Analyzer. Sci. Rep. 6, 34486; Doi: 10.1038/srep34486.

103.   Hanne, J.; Zila, V.; Heilemann, M.; Müller, B. & Kräusslich, H.-G. (2016). Super-resolved insights into human immunodeficiency virus biology. FEBS Letters, 590(13), 1858-76.

102.   Widera, D.; Klenke, C.; Nair, D.; Heidbreder, M.; Sibarita, J. B.; Choquet, D.; Kaltschmidt, B.; Heilemann, M.# & Kaltschmidt, C. (2016). Single-molecular localization microscopy reveals an influence of glutamate on the lateral dynamics of NF-kB in neurites of living hippocampal neurons. Neurophotonics, 3(4):041804.

101.   Venkataramani, V.; Herrmannsdörfer, F.; Heilemann, M.# & Kuner, T. (2016). SuReSim - Simulating localization microscopy experiments from ground truth models. Nat Methods 13, 319-321.

100.   Zessin, P.; Sporbert, A. & Heilemann, M.# (2016). PCNA shows two modes of mobility with a constant ratio throughout S-phase in replicating mammalian cells. Scientific Reports 6, 18779.

99.   Kollmannsperger, A.; Sharei, A.; Raulf, A.; Heilemann, M.; Langer, R.; Jensen, K. F.; Wieneke, R. & Tampé, R. (2016). High-content live-cell protein labeling with nanometer precision by cell squeezing. Nature Communication 7:10372.



98.    Friedrich, F.; Klehs, K.; Fichte, M. A. H.; Junek, S.; Heilemann, M.#  & Heckel, A. (2015). A two-photon activatable amino acid linker for the induction of fluorescence. Chem Comm, doi: 10.1039/C5CC05700K.

97.    Fricke, F.; Beaudouin, J.; Eils, R. & Heilemann, M.#  (2015). One, two, three: subunit counting with SMLM. Scientific Reports  5, 14072.

96.    Devraj, K.; Poznanovic, S.; Spahn, C.; Schwall, G.; Harter, P.; Mittelbronn, M.; Antoniello, K.; Paganetti, P.; Muhs, A.; Heilemann, M.; Hawkins, R. A.; Schrattenholz, A. & Liebner, S. (2015). BACE-1 is expressed in the blood-brain barrier endothelium and is upregulated in a murine model of Alzheimer's disease. Journal of Cerebral Blood Flow & Metabolism, 36(7), 1281-94.

95.    Finan, K.; Raulf, A. & Heilemann, M.# (2015). A set of homo-oligomeric standards allows accurate protein counting. Angewandte Chemie 54(41), 12049-12052.

94.    Foo, Y. H.; Spahn, C.; Zhang, H.; Heilemann, M.#  & Kenney, L. J. (2015). Single cell super-resolution imaging of E. coli OmpR during environmental stress. Integr. Biol., 7, 1297-1308.

93.    Volz, Y.; Koschut, D.; Matzke, A.; Dietz, M. S.; Karathanasis, C.; Richert, L.; Wagner, M. G.; Mely, Y.; Heilemann, M.; Niemann, H. H. & Orian-Rousseau, V. (2015). Direct binding of hepatocyte growth factor and vascular endothelial growth factor to CD44v6. Bioscience Reports Jun 29, 2015, ; DOI: 10.1042/BSR20150093.

92.    Wieneke, R.; Raulf, A.; Kollmannsperger, A.; Heilemann, M.#  & Tampé, R. (2015). SLAP: Small Labeling Pair for Single-Molecule Super-Resolution Imaging. Angewandte Chemie 127(35), 10354-10357.

91.    Seybold, C.; Elserafy, M.; Rüthnick, D.; Ozboyaci, M.; Neuner, A.; Flottmann, B.; Heilemann, M.; Wade, R. C. & Schiebel, E. (2015). Kar1 binding to Sfi1 C-terminal regions anchors the SPB bridge to the nuclear envelope. JCB vol. 209 no. 6, 843-861.

90.    Palayret, M.; Armes, H.; Basu, S.; Watson, A. T.; Herbert, A.; Lando, D.; Etheridge, T. J.; Endesfelder, U.; Heilemann, M.; Laue, E.; Carr, A. M.; Klenerman, D. & Lee, S. F. (2015). Virtual light-sheet imaging enables optical sectioning in super-resolution microcsopy. PLoS ONE 10(4): e0125438.

89.    Fricke, F.; Dietz, M. S. Heilemann, M.# (2015). Single-molecule methods to study membrane receptor oligomerization. ChemPhysChem 2015, 16, 713 – 721.

88.    Spahn, C.; Cella-Zannacchi, F.; Endesfelder, U. & Heilemann, M.# (2015). Correlative super-resolution imaging of RNA polymerase distribution and dynamics, bacterial membrane and chromosomal structure in E. coli. Methods and Applications inFluorescence. Methods Appl. Fluoresc. 3 014005.


87.    Nandi, C.K., Barth, H.-D., Brutschy, B. (2014). A new liquid droplet laser desorption source combined with supersonic jet expansion: Application to phenol and its water clusters. Z. Phys. Chem. 228, 449-457.

86.    Endesfelder, U. (2014) Advances in Correlative Single-Molecule Localization Microscopy and Electron Microscopy. NanoBioImaging 1, 29–37.

85.    Raulf, A., Spahn, C., Zessin, P. J. M., Finan K., Bernhardt S., Heckel A. & Heilemann, M.# (2014). Click chemistry facilitates direct labeling and super-resolution imaging of nucleic acids and proteins. RSC Adv., 2014,4, 30462-30466.

84.    Perkovic, M.; Kunz, M.; Endesfelder, U.; Bunse, S.; Wigge, C.; Yu, Z.; Hodirnau, V.; Scheffer, M.P.; Seybert, A.; Malkusch, S.; Schuman, E.M.; Heilemann, M. & Frangakis, A.M. (2014). Correlative Light- and Electron Microscopy with chemical tags. J Struct Biol, 186(2), 205-13.

83.     Endesfelder, U. & Heilemann, M. (2014). Art and artifacts in single-molecule localization microscopy: beyond attractive images. Nature Methods 11, 235-238.

82.     Fricke, F.; Malkusch, S.; Wangorsch, G.; Greiner, J. F.; Kaltschmidt, B.; Kaltschmidt, C.; Widera, D.; Dandekar, T. & Heilemann, M.# (2014). Quantitative single-molecule localization microscopy combined with rule-based modeling reveals ligand-induced TNF-R1 reorganization towards higher order oligomers. Histochemistry and Cell Biology, 142(1), 91-101.

81.     Diez, L. T.; Bönsch, C.; Malkusch, S.; Truan, Z.; Munteanu, M.; Heilemann, M.; Hartley, O.; Endesfelder, U. & Fürstenberg, A. (2014). Coordinate-based co-localization mediated analysis of arrestin clustering upon stimulation of the C-C chemokine receptor 5 with RANTES analogues. Histochemistry and Cell Biology, 142(1), 69-77.

80.     Gunkel, M.; Flottmann, B.; Heilemann, M.; Reymann, J. & Erfle, H. (2014). Integrated and correlative high-throughput and super-resolution microsgopy. Histochemistry and Cell Biology, 141(6), 597-603.

79.     Endesfelder, U.; Malkusch, S.; Fricke, F. & Heilemann, M.# (2014). A simple method to estimate the average localization precision of a single-molecule localization microscopy experiment. Histochemistry and Cell Biology, 141(6), 629-38.

78.    Nanguneri, S.; Flottmann, B.; Herrmannsdörfer, F.; Kuner, T. & Heilemann, M.# (2014). Single-molecule super-resolution imaging by tryptophan-quenching-induced photoswitching of phalloidin-fluorophore-conjugates. J Microsc Res Tech, 77(7), 510-6.

77.     Spahn, C.; Endesfelder, U. & Heilemann, M.# (2014). Super-resolution imaging of Escherichia coli chromosomes reveals asymmetric replication and segregation. J. Struct Biol. 185, 243-249.

76.   Klehs, K.; Spahn, C.; Endesfelder, U.; Lee, S. L.; Fürstenberg, A. & Heilemann, M.# (2013). Increasing the brightness of carbocyanine fluorophores. ChemPhysChem 15, 637-641.

75.     Dietz, M.; Fricke, F.; Krüger, C.; Niemann, H. H. & Heilemann, M.# (2013). Receptor-ligand interactions: binding affinities studied with single-molecule and super-resolution microscopy on intact cells. ChemPhysChem 15, 671-676.



74.     Sroka, R.; Pongratz, T.; Siegrist, K.; Burgmeier, C.; Barth, H.D.; Schmedt, C.G. (2013). Endovenous laser application strategies to improve endoluminal energy application. Phlebologie 42(3), 121-129

73.     Flottmann, B.; Gunkel, M.; Lisaukas, T.; Heilemann, M.#; Starkuviene, V.; Reymann, J. & Erfle, H. (2013). Correlative light microscopy for high-content screening. BioTechniques 2013, 55(5), 243–252

72.     Truan, Z.; Börsch, C.; Malkusch, S.; Endesfelder, U.; Munteanu, M.; Hartley, O.; Heilemann, M.# & A. Fürstenberg (2013). Quantitative morphological analysis of arrestin2 clustering upon G protein-coupled receptor stimulation by super-resolution microscopy. J Struct Biol. 2013, 184(2), 329-34.

 71.     Zessin, P.; Krüger, C.; Malkusch, S.; Endesfelder, U. & Heilemann, M.# (2013). A non-linear drift-correction and channel-alignment method for localization microscopy techniques using uniform 3D distributions of fiducial markers. Optical Nanoscopy 2013, 2-4

 70.     Fürstenberg, A. & Heilemann, M.# (2013) Single-molecule localization microscopy – near-molecular spatial resolution in light microscopy with photoswitchable fluorophores. PhysChemChemPhys, 15(36), 14919-30.

69.      Müller, B. & Heilemann, M.(2013) Shedding new light on viruses: super-resolution microscopy for studying human immunodeficiency virus. Trends Microbiol. 2013, 21(10), 522-33.

68.      Endesfelder, U.; Finan, K.; Holden, S. J.; Cook, P. R.; Kapanidis, A. K. & Heilemann, M. # (2013) Nanoscale organization of RNA polymerase in E. coli. Biophys J. 105(1), 172-81.

67.      Dietz, M.; Haße, D.; Ferraris, D. M.; Göhler, A.; Niemann, H. H. & Heilemann, M.# (2013). Single-molecule photobleaching reveals MET receptor dimerization upon ligand binding in intact cells. BMC Biophysics, 6(1), 6.

66.      Sporbert, A.; Cseresnyes, Z.; Heidbreder, M.; Domaing, P.; Hauser, S.; Kaltschmidt, B.; Kaltschmidt, C.; Heilemann, M. & Widera, D. (2013) Simple method for sub-diffraction resolution imaging of cellular structures on standard confocal microscopes by three-photon absorption of quantum dots. PLoS One, 8(5), e64023.

65.      Kechkar, A.; Nair, D.; Heilemann, M.; Choquet, D. & Sibarita, J. B. (2013) Real-time analysis and visualization for single-molecule based super-resolution microscopy. PLoS One, 8(4), e62918.

64.      Muranyi, W.; Malkusch, S.; Müller, B.; Heilemann, M.& Kräusslich, H.-G. (2013) Super-resolution Microscopy Reveals Specific Recruitment of HIV-1 Envelope Proteins to Viral Assembly Sites dependent on the Envelope C-Terminal Tail. PLoS Pathogens 9(2), e1003198.

63.      Finan, K.; Flottmann, B. & Heilemann, M. # (2013) Photoswitchable fluorophores for single-molecule loclization microscopy. Methods in Molecular Biology, 950, 131-151.

62.      Malkusch, S.; Muranyi, W.; Müller, B.; Kräusslich, H.-G. & Heilemann, M.#(2012) Single-molecule, coordinate-based analysis of the morphology of HIV assembly sites with near-molecular spatial resolution. Histochemistry and Cell Biology, 139(1), 173-179



61.      Sibarita, J. B. & Heilemann, M (2012) Targeting, resolving and quantifying cellular structures by single-molecule localization microscopy. EMBO Reports, 13(12), 1043-1045

60.      Dutta, S.; Flottmann, B.; Heilemann, M. & Mokhir, A. (2012) Hybridization and reaction-based, fluorogenic nucleic acid probes. Chemical Communications, 48(77), 9664-6.

59.      Neugart, F.; Widera, D.; Kaltschmidt, B.; Kaltschmidt, C. & Heilemann, M.#(2012) TNF receptor membrane dynamics studied with fluorescence microscopy and spectroscopy. In: Fluorescent Methods to Study Biological Membranes. Springer Series on Fluorescence, Springer: 439–457.

58.      Heidbreder, M.; Zander, C.; Malkusch, S.; Widera, D.; Kaltschmidt, B.; Kaltschmidt, C.; Nair, D.; Choquet, D.; Sibarita, J.-B. & Heilemann, M. # (2012) TNFalpha influences the lateral dynamics of TNF receptor I in living cells. BBA – Molecular Cell Research, 1823(10), 1984-9.

57.      Lando, D.; Endesfelder, U.; Berger, H.; Dunne, P. D.; McColl, J.; Klenerman, D.; Carr, A. M.; Sauer, M.; Allshire, R.; Heilemann, M. # & Laue, E. D. (2012) Quantitative single molecule microscopy reveals that CENP-Acnp1 deposition occurs during G2 in fission yeast. Open Biology, 2, 120078.

56.      Bar-on, D.; Wolter, S.; van de Linde, S.; Heilemann, M.; Nachliel, E.; Gutman, M.; Sauer, M. & Ashery, U. (2012) Super-resolution imaging reveals the internal architecture of nano-sized syntaxin clusters. Journal of Biological Chemistry, 287, 27158-67.

55.      Nangunieri, S.; Flottmann, B.; Horstmann, H.; Heilemann, M. # & Kuner, T. (2012) Three-dimensional, tomographic super-resolution fluorescence imaging of serially sectioned thick samples. Plos ONE, 7, e38098.

54.      Brodehl, A.; Hedde, P. N.; Dieding, M.; Fatima, A.; Walhorn, V.; Gayda, S.; Saric, T.; Klauke, B.; Gummert, J.; Anselmetti, D.; Heilemann, M.; Nienhaus, G. U. & Milting, H. (2012) Molecular insights into filament assembly defects of ARVC-related desmin mutations. Journal of Biological Chemistry, 287, 16047-16057.

53.      Lampe, A.; Haucke, V.; Heilemann, M. & Schmoranzer, J. (2012) Multi-color direct STORM with red emitting carbocyanines. Biology of the Cell, 104, 229-237.

52.      van de Linde, S.; Heilemann, M. & Sauer, M. (2012) Live-cell super-resolution imaging with synthetic fluorophors. Annual Reviews of Physical Chemistry, 63, 519-540.

51.      Löschberger, A.; van de Linde, S.; Dabauvalle, M.-C.; Rieger, B.; Heilemann, M.; Krohne, G. & Sauer, M. (2012) Super-resolution imaging reveals eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution. J Cell Science, 125, 570-575.

50.      Heilemann, M.# (2012) Elucidating Cellular Structures – Superresolution Microscopy. Comprehensive Biophysics, Elsevier.

49.      Zessin, P. J. M.; Finan, K. & Heilemann, M. # (2012) Super-resolution fluorescence imaging of chromosomal DNA using click chemistry. Journal of Structural Biology, 177, 344-348.

48.      Dertinger, T..; Colyer, R.; Vogel, R.; Heilemann, M.; Sauer, M.; Enderlein, J. & Weiss, S.. (2012) Super-resolution optical fluctuation imaging (SOFI). Advances in Experimental Medicine and Biology, 733, 17-21.

47.      Malkusch, S.; Endesfelder, U.; Mondry, J.; Gelléri, Martón; Verveer, P. J. & Heilemann, M. # (2012) Coordinate-based colocalization analysis of single-molecule localization microscopy data. Histochem Cell Biology, 137, 1-10.



46.      Eckhardt, M.; Anders, M.; Muranyi, W.; Heilemann, M.; Krijnse-Locker, J. & Müller, B. (2011) A SNAP-Tagged Derivative of HIV-1 – a Versatile Tool to Study Virus-Cell Interactions. PlosONE, 6(7), e22007.

45.      van de Linde, S.; Löschberger, A.; Klein, T.; Heidbreder, M.; Wolter, S.; Heilemann, M. & Sauer, M. (2011) Direct stochastic optical reconstruction microscopy with standard fluorescent probes. Nature Protocols, 6(7), 991-1009.  

44.      Widera, D.; Heimann, P.; Zander, C.; Imielski, Y.; Heidbreder, M.; Heilemann, M.; Kaltschmidt, C. & Kaltschmidt, B. (2011) Myalinating Schwann Cells can be reprogrammed to multipotency by culture. Stem Cells and Development, 20(12), 2053-2064.

43.      Endesfelder, U.; Malkusch, S.; Flottmann, B.; Mondry, J.; Liguzinski, P.; Verveer, P. J. & Heilemann, M.# (2011) Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging. Molecules, 16, 3106-3118.

42.      Wolter, S.; Endesfelder, U.; van de Linde, S.; Heilemann, M. & Sauer, M. (2011) Measuring localization performance of super-resolution algorithms on very active samples. Optics Express 19(8), 7020-7033.

41.      van de Linde, S.; Krstic, I.; Prisner, T.; Doose, S.; Heilemann, M. & Sauer, M. (2011) Photoinduced formation of stable dye radicals. Photochemical & Photobiological Sciences, 10, 499-506.



40.      Kottke, T.; van de Linde, S.; Sauer, M.; Kakorin, S. & Heilemann, M.# (2010) Identification of the Product of Photoswitching of an Oxazine Fluorophore Using Fourier Transform Infrared Difference Spectroscopy. Physical Chemistry Letters, 1, 3156-3159.

39.      Dertinger, T.; Heilemann, M.#; Vogel, R.; Sauer, M. & Weiss, S. (2010) Superresolution Optical Fluctuation Imaging with Organic Dyes. Angewandte Chemie, 49, 9441-9443.

38.      Zheng, Z.; Nottbohm, C. T.; Turchanin, A.; Muzik, H.;  Beyer, A.; Heilemann, M.; Sauer, M.; Gölzhäuser, M. (2010) Janus nanomembranes: bilaterally functionalized freestanding 1 nm thick carbon membranes. Angewandte Chemie, 49, 8493-8497.

37.      Wombacher, R.; Heidbreder, M.; van de Linde, S.; Sheetz, M. P.; Heilemann, M.#; Cornish, V. W. & Sauer, M. (2010) Live-cell super-resolution imaging of core histones with trimethoprim conjugates. Nature Methods, 7, 717-719.

36.      Uphoff, S.; Holden, S.; Le Reste, L.; van de Linde, S.; Heilemann, M. & Kapanidis, A. N. (2010) Monitoring multiple distances within a single molecule using switchable FRET. Nature Methods, 7, 831-836.

35.      Heidbreder, M.; Endesfelder, U.; van de Linde, S.; Hennig, S.; Widera, D.; Kaltschmidt, B.; Kaltschmidt C. & Heilemann, M.# (2010) Subdiffraction Fluorescence Microscopy of Biomolecular Structure and Distributions with Quantum Dot Triexciton Imaging (QDTI). Biochimica et Biophysica Acta, 1803, 1224-1229.

34.      Hohlbein, J.; Gryte, K.; Heilemann, M. & Kapanidis, A. N. (2010) Surfing on a new wave of single-molecule fluorescence methods. Physics and Biology, 7, 031001.

33.      Heilemann, M.# (2010) Fluorescence microscopy beyond the diffraction limit.  Journal of Biotechnology, 149, 243-251.

32.      van de Linde, S.; Wolter, S.; Heilemann, M.# & Sauer, M. (2010) The effect of photoswitching kinetics and labeling densities on super-resolution fluorescence imaging. Journal of Biotechnology, 149, 260-266.

31.      Nottbohm, C. T.; Sopher, R.; Heilemann, M.; Sauer, M. & Golzhäuser A. (2010) Fluorescently labeled 1 nm thin carbon nanomembranes. Journal of Biotechnology, 149, 267-271.

30.      Endesfelder, U.; van de Linde, S.; Wolter, S.; Sauer, M & Heilemann, M.# (2010) Subdiffraction-Resolution Fluorescence Microscopy of Myosin-Actin Motility. ChemPhysChem, 11, 836-840.

29.      Seefeldt, B; Kasper, R.; Beining, M.; Mattay, J.; Arden-Jacob, J.; Kemnitzer, N.; Drexhage, K. H.; Heilemann, M. & Sauer, M. (2010) Spiropyrans as molecular optical switches. Photochemical & Photobiological Sciences, 9, 213-220.

28.      Lymperopoulos, K.; Crawford, R.; Torella, J. P.; Heilemann, M.; Hwang, L. C.; Holden, S. J. and Kapanidis, A. N. (2010) Single-molecule DNA biosensors for protein and ligand detection. Angewandte Chemie, 49, 1316-1320.

27.      Wolter, S.; Schüttpelz, M.; Tscherepanow, M.; van de Linde, S.; Heilemann, M. & Sauer, M. (2010) Real-time computation for subdiffraction-resolution fluorescence images. Journal of Microscopy, 237(1), 12-22.



26.      Heilemann, M.#; van de Linde, S.; Mukherjee, A. & Sauer, M. (2009) Super-resolution imaging with small organic fluorophores. Angewandte Chemie, 48, 6903-8.

25.      Heilemann, M. & Sauer, M. (2009) Superhochauflösung: Mikroskopie unterhalb des Beugungslimits mit konventionellen Fluoreszenzfarbstoffen. Labor & more, 04-09, 32-34.

24.      Hennig, S.; van de Linde, S.; Heilemann, M. # & Sauer, M. (2009) Quantum dot triexciton imaging with three-dimensional subdiffraction resolution. Nanoletters, 9, 2466-70.

            (highlighted in Nature Materials, 8, 536 (2009))

23.      Heilemann, M.# (2009) Light at the End of the Tunnel. Angewandte Chemie, 48, 3908-10.

22.      Heilemann, M.; Lymperopoulos, K.; Hwang, L. C. & Kapanidis, A. (2009) Single-Molecule FRET-Analysis of protein-DNA complexes. Methods in Molecular Biology, 543, 503-521.

21.      van de Linde, S.; Endesfelder, U.; Mukherjee, A.; Schüttpelz, M.; Wiebusch, G.; Wolter, S.; Heilemann, M.# & Sauer, M. (2009) Multicolor Photoswitching Microscopy for Subdiffraction Resolution Fluorescence Imaging. Photochemical and Photobiological Sciences, 8, 465-469.

20.      Heilemann, M.#; Dedecker, P.; Hofkens, J. & Sauer, M. (2009) Photoswitches: Key Molecules for Subdiffraction-Resolution Fluorescence Imaging and Molecular Quantification. Laser and Photonics Reviews, 3, 180-202.



19.      van de Linde, S.; Kasper, R.; Heilemann, M. # & Sauer, M. (2008) Photoswitching Microscopy with Standard Fluorophores. Applied Phys. B, 93, 725-731.

18.      van de Linde, S.; Sauer, M. & Heilemann, M.# (2008) Subdiffraction-Resolution Fluorescence Imaging of Proteins in the Mitochondrial Inner Membrane with Photoswitchable Fluorophores. Journal of Structural Biology, 164, 250-254.

17.      Heilemann, M.#; van de Linde, S.; Schüttpelz, M.; Kasper, R.; Seefeldt, B.; Mukherjee, A.; Tinnefeld, P. & Sauer, M. (2008) Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes. Angew. Chemie, 47, 6172-6176.

16.      Goodman, R. P.; Heilemann, M.; Doose, S.; Kapanidis, A. N. & Turberfield, A. J. (2008) Reconfigurable, Braced, Three-Dimensional DNA Nanostructures. Nature Nanotechnology 3, 93-96.

15.      Seefeldt, B.; Kasper, R.; Seidel, T.; Tinnefeld, P.; Dietz, K.-J.; Heilemann, M.# & Sauer, M. (2008) Fluorescent Proteins for Single-Molecule Fluorescence Applications. Journal of Biophotonics 1, 74-82.

14.      Vogelsang, J.; Kasper, R.; Steinhauer, C.; Person, B.; Heilemann, M.; Sauer, M. & Tinnefeld, P. (2008). A reducing and oxidizing system minimizes photobleaching and blinking of fluorescent dyes. Angew. Chemie 47, 5465-5469.



13.      Roth, C. M., Heinlein, P. I., Heilemann, M.# & Herten, D. P. (2007). Imaging diffusion in living cells using time-correlated single-photon counting. Anal Chem 79, 7340-5.

12.      Doose, S., Heilemann, M., Michalet, X., Weiss, S. & Kapanidis, A. N. (2007). Periodic acceptor excitation spectroscopy of single molecules. Eur Biophys J 36, 669-74.

11.      Clifford, J. N., Bell, T. D., Tinnefeld, P., Heilemann, M., Melnikov, S. M., Hotta, J., Sliwa, M., Dedecker, P., Sauer, M., Hofkens, J. & Yeow, E. K. (2007). Fluorescence of single molecules in polymer films: sensitivity of blinking to local environment. J Phys Chem B 111, 6987-91.



10.      Sanchez-Mosteiro, G., van Dijk, E. M., Hernando, J., Heilemann, M., Tinnefeld, P., Sauer, M., Koberling, F., Patting, M., Wahl, M., Erdmann, R., van Hulst, N. F. & Garcia-Parajo, M. F. (2006). DNA-based molecular wires: multiple emission pathways of individual constructs. J Phys Chem B 110, 26349-53.

9.         Heilemann, M., Kasper, R., Tinnefeld, P. & Sauer, M. (2006). Dissecting and reducing the heterogeneity of excited-state energy transport in DNA-based photonic wires. J Am Chem Soc 128, 16864-75.



8.         Tinnefeld, P., Heilemann, M. & Sauer, M. (2005). Design of molecular photonic wires based on multistep electronic excitation transfer. Chemphyschem 6, 217-22.

7.         Heinlein, T., Biebricher, A., Schlüter, P., Roth, C. M., Herten, D. P., Wolfrum, J., Heilemann, M., Muller, C., Tinnefeld, P. & Sauer, M. (2005). High-resolution colocalization of single molecules within the resolution gap of far-field microscopy. Chemphyschem 6, 949-55.

6.         Heilemann, M., Margeat, E., Kasper, R., Sauer, M. & Tinnefeld, P. (2005). Carbocyanine dyes as efficient reversible single-molecule optical switch. J Am Chem Soc 127, 3801-6.


2004 and before 

5.         Tinnefeld, P., Buschmann, V., Weston, K. D., Biebricher, A., Herten, D. P., Piestert, O., Heinlein, T., Heilemann, M.& Sauer, M. (2004). How single molecule photophysical studies complement ensemble methods for a better understanding of chromophores and chromophore interactions. Recent Res. Devel. Phys. Chem. 7, 95-125.

 4.         Herten, D. P., Biebricher, A., Heilemann, M., Heinlein, T., Müller, C., Schlüter, P., Tinnefeld, P., Weston, K. D., Sauer, M. & Wolfrum, J. (2004). Optical single molecule techniques for analytical and biological applications. Recent Res. Devel. Applied Phys. 7, 2-24.

3.         Heilemann, M., Tinnefeld, P., Sanchez Mosteiro, G., Garcia Parajo, M., Van Hulst, N. F. & Sauer, M. (2004). Multistep energy transfer in single molecular photonic wires. J Am Chem Soc 126, 6514-5.

            (highlighted in Science, 304, 5675 (2004))

2.         Devos, I., Womes, M., Heilemann, M., Olivier-Fourcade, J., Jumas, J.-C. & Tirado, J. L. (2004). Lithium insertion mechanism in CoSb3 analysed by 121Sb Moessbauer spectrometry, X-ray absorption spectroscopy and electronic structure calculations. J. Mat. Chem. 14, 1759-67.

1.         Heilemann, M., Herten, D. P., Heintzmann, R., Cremer, C., Muller, C., Tinnefeld, P., Weston, K. D., Wolfrum, J. & Sauer, M. (2002). High-resolution colocalization of single dye molecules by fluorescence lifetime imaging microscopy. Anal Chem 74, 3511-7.