116.    Grumati, P.; Morozzi, G; Hölper, S.; Mari, M.; Harwardt, M.-L.; Yan, R.; Müller, S.; Reggiori, F.; Heilemann, M. & Dikic, I. (2017). Full length RTN3 regulates turnover of tubular endoplasmic reticulum via selective autophagy.. Accepted by Elife

115.    van Wijk, S.; Fricke, F.; Herhaus, L.; Gupta, J.; Hötte, K.; Pampaloni, F.; Grumati, P.; Kaulich, M.; Sou, Y.; Komatsu, M.; Greten, F.; Simone, F.; Heilemann, M. & Dikic, I. (2017). Linear ubiquitination of cytosolic SalmonellaTyphimurium activates NF-κB and restricts bacterial proliferation. Nature Microbiology 2, 17066, doi:10.1038/nmicrobiol.2017.66.

114.    Sauer, M.; Heilemann, M. (2017). , Single-Molecule Localization Microscopy in Eukaryotes. Chem. Rev., Article ASAP. doi:10.1021/acs.chemrev.6b00667.

113.    Karathanasis, C.; Fricke, F.; Hummer, G. & Heilemann, M.# (2017). Molecule counts in localization microscopy with organic fluorophores. Chemphyschem. 2017 Feb 14. doi: 10.1002/cphc.201601425.

112.    Warhaut, S.; Mertinkus, K. R.; Höllthaler, P.; Fürtig, B.; Heilemann, M.; Hengesbach, M. & Schwalbe, H. (2017). Ligand-modulated folding of the full-length adenine riboswitch probed by NMR and single-molecule FRET spectroscopy. Nucleic Acids Res. 2017 Feb 15. doi: 10.1093/nar/gkx110.

111.    Herrmannsdörfer, F.; Flottmann, B.; Nanguneri, S.; Venkataramani, V.; Horstmann, H.; Kuner, T. & Heilemann, M.#  (2017). 3D dSTORM imaging of fixed brain tissue. Methods Mol Biol. 1538:169-184.


110.   Diekmann, R.; Wolfson, D. L.; Spahn, C.; Heilemann, M.; Schüttpelz, M. & Huser, T. (2016) Nanoscopy of bacterial cells immobilized by holographic optical tweezers.Nat Commun. 7:13711. doi:10.1038/ncomms13711.

109.   Spahn, C.; Glaesmann, M.; Foo, Y. H.; Lampe, M.; Kenney, L. & Heilemann, M.# (2016). Sequential super-resolution imaging of bacterial regulatory proteins, the nucleoid and the cell membrane in single, fixed E. coli cells. Methods in Molecular Biology, accepted

108.   Spahn, C.; Herrmannsdörfer, F.; Kuner, T. & Heilemann, M.# (2016). Cluster analysis through temporal subsampling. Nat Methods 13(12):963–964. doi:10.1038/nmeth.4065.

107.   Hummer, G.; Fricke, F. & Heilemann, M. (2016) Model-independent counting of molecules in single-molecule localization microscopy. Mol Biol Cell. 27(22):3637-3644.

106.   Zeuner, M.-T.; Krüger, C. L.; Volk, K.; Bieback, K.; Cottrell, G. S.; Heilemann, M. & Widera, D. (2016). Ligand-Biased Regulation of Inflammatory Balance is an Essential Feature of TLR4 in Glioma Cells. Biochim Biophys Acta. 1863(12):3084-3095. doi: 10.1016/j.bbamcr.2016.09.016.

105.   Fricke, F.; Beaudouin, J.; Malkusch, S.; Eils, R. & Heilemann, M.# (2016). Quantitative single-molecule localization microscopy (qSMLM) of membrane proteins based on kinetic analysis of fluorophore blinking cycles. Accepted by Methods in Molecular Biology.

104.   Malkusch, S. and Heilemann, M. (2016). Extracting quantitative information from single Molecule super-resolution imaging data with LAMA – LocAlization Microscopy Analyzer. Sci. Rep. 6, 34486; Doi: 10.1038/srep34486.

103.   Hanne, J.; Zila, V.; Heilemann, M.; Müller, B. & Kräusslich, H.-G. (2016). Super-resolved insights into human immunodeficiency virus biology. FEBS Letters, 590(13), 1858-76.

102.   Widera, D.; Klenke, C.; Nair, D.; Heidbreder, M.; Sibarita, J. B.; Choquet, D.; Kaltschmidt, B.; Heilemann, M.# & Kaltschmidt, C. (2016). Single-molecular localization microscopy reveals an influence of glutamate on the lateral dynamics of NF-kB in neurites of living hippocampal neurons. Neurophotonics, 3(4):041804.

101.   Venkataramani, V.; Herrmannsdörfer, F.; Heilemann, M.# & Kuner, T. (2016). SuReSim - Simulating localization microscopy experiments from ground truth models. Nat Methods 13, 319-321.

100.   Zessin, P.; Sporbert, A. & Heilemann, M.# (2016). PCNA shows two modes of mobility with a constant ratio throughout S-phase in replicating mammalian cells. Scientific Reports 6, 18779.

99.   Kollmannsperger, A.; Sharei, A.; Raulf, A.; Heilemann, M.; Langer, R.; Jensen, K. F.; Wieneke, R. & Tampé, R. (2016). High-content live-cell protein labeling with nanometer precision by cell squeezing. Nature Communication 7:10372.


98.    Friedrich, F.; Klehs, K.; Fichte, M. A. H.; Junek, S.; Heilemann, M.#  & Heckel, A. (2015). A two-photon activatable amino acid linker for the induction of fluorescence. Chem Comm, doi: 10.1039/C5CC05700K.

97.    Fricke, F.; Beaudouin, J.; Eils, R. & Heilemann, M.#  (2015). One, two, three: subunit counting with SMLM. Scientific Reports  5, 14072.

96.    Devraj, K.; Poznanovic, S.; Spahn, C.; Schwall, G.; Harter, P.; Mittelbronn, M.; Antoniello, K.; Paganetti, P.; Muhs, A.; Heilemann, M.; Hawkins, R. A.; Schrattenholz, A. & Liebner, S. (2015). BACE-1 is expressed in the blood-brain barrier endothelium and is upregulated in a murine model of Alzheimer's disease. Journal of Cerebral Blood Flow & Metabolism, 36(7), 1281-94.

95.    Finan, K.; Raulf, A. & Heilemann, M.# (2015). A set of homo-oligomeric standards allows accurate protein counting. Angewandte Chemie 54(41), 12049-12052.

94.    Foo, Y. H.; Spahn, C.; Zhang, H.; Heilemann, M.#  & Kenney, L. J. (2015). Single cell super-resolution imaging of E. coli OmpR during environmental stress. Integr. Biol., 7, 1297-1308.

93.    Volz, Y.; Koschut, D.; Matzke, A.; Dietz, M. S.; Karathanasis, C.; Richert, L.; Wagner, M. G.; Mely, Y.; Heilemann, M.; Niemann, H. H. & Orian-Rousseau, V. (2015). Direct binding of hepatocyte growth factor and vascular endothelial growth factor to CD44v6. Bioscience Reports Jun 29, 2015, ; DOI: 10.1042/BSR20150093.

92.    Wieneke, R.; Raulf, A.; Kollmannsperger, A.; Heilemann, M.#  & Tampé, R. (2015). SLAP: Small Labeling Pair for Single-Molecule Super-Resolution Imaging. Angewandte Chemie 127(35), 10354-10357.

91.    Seybold, C.; Elserafy, M.; Rüthnick, D.; Ozboyaci, M.; Neuner, A.; Flottmann, B.; Heilemann, M.; Wade, R. C. & Schiebel, E. (2015). Kar1 binding to Sfi1 C-terminal regions anchors the SPB bridge to the nuclear envelope. JCB vol. 209 no. 6, 843-861.

90.    Palayret, M.; Armes, H.; Basu, S.; Watson, A. T.; Herbert, A.; Lando, D.; Etheridge, T. J.; Endesfelder, U.; Heilemann, M.; Laue, E.; Carr, A. M.; Klenerman, D. & Lee, S. F. (2015). Virtual light-sheet imaging enables optical sectioning in super-resolution microcsopy. PLoS ONE 10(4): e0125438.

89.    Fricke, F.; Dietz, M. S. Heilemann, M.# (2015). Single-molecule methods to study membrane receptor oligomerization. ChemPhysChem 2015, 16, 713 – 721.

88.    Spahn, C.; Cella-Zannacchi, F.; Endesfelder, U. & Heilemann, M.# (2015). Correlative super-resolution imaging of RNA polymerase distribution and dynamics, bacterial membrane and chromosomal structure in E. coli. Methods and Applications inFluorescence. Methods Appl. Fluoresc. 3 014005.


87.    Nandi, C.K., Barth, H.-D., Brutschy, B. (2014). A new liquid droplet laser desorption source combined with supersonic jet expansion: Application to phenol and its water clusters. Z. Phys. Chem. 228, 449-457.

86.    Endesfelder, U. (2014) Advances in Correlative Single-Molecule Localization Microscopy and Electron Microscopy. NanoBioImaging 1, 29–37.

85.    Raulf, A., Spahn, C., Zessin, P. J. M., Finan K., Bernhardt S., Heckel A. & Heilemann, M.# (2014). Click chemistry facilitates direct labeling and super-resolution imaging of nucleic acids and proteins. RSC Adv., 2014,4, 30462-30466.

84.    Perkovic, M.; Kunz, M.; Endesfelder, U.; Bunse, S.; Wigge, C.; Yu, Z.; Hodirnau, V.; Scheffer, M.P.; Seybert, A.; Malkusch, S.; Schuman, E.M.; Heilemann, M. & Frangakis, A.M. (2014). Correlative Light- and Electron Microscopy with chemical tags. J Struct Biol, 186(2), 205-13.

83.     Endesfelder, U. & Heilemann, M. (2014). Art and artifacts in single-molecule localization microscopy: beyond attractive images. Nature Methods 11, 235-238.

82.     Fricke, F.; Malkusch, S.; Wangorsch, G.; Greiner, J. F.; Kaltschmidt, B.; Kaltschmidt, C.; Widera, D.; Dandekar, T. & Heilemann, M.# (2014). Quantitative single-molecule localization microscopy combined with rule-based modeling reveals ligand-induced TNF-R1 reorganization towards higher order oligomers. Histochemistry and Cell Biology, 142(1), 91-101.

81.     Diez, L. T.; Bönsch, C.; Malkusch, S.; Truan, Z.; Munteanu, M.; Heilemann, M.; Hartley, O.; Endesfelder, U. & Fürstenberg, A. (2014). Coordinate-based co-localization mediated analysis of arrestin clustering upon stimulation of the C-C chemokine receptor 5 with RANTES analogues. Histochemistry and Cell Biology, 142(1), 69-77.

80.     Gunkel, M.; Flottmann, B.; Heilemann, M.; Reymann, J. & Erfle, H. (2014). Integrated and correlative high-throughput and super-resolution microsgopy. Histochemistry and Cell Biology, 141(6), 597-603.

79.     Endesfelder, U.; Malkusch, S.; Fricke, F. & Heilemann, M.# (2014). A simple method to estimate the average localization precision of a single-molecule localization microscopy experiment. Histochemistry and Cell Biology, 141(6), 629-38.

78.    Nanguneri, S.; Flottmann, B.; Herrmannsdörfer, F.; Kuner, T. & Heilemann, M.# (2014). Single-molecule super-resolution imaging by tryptophan-quenching-induced photoswitching of phalloidin-fluorophore-conjugates. J Microsc Res Tech, 77(7), 510-6.

77.     Spahn, C.; Endesfelder, U. & Heilemann, M.# (2014). Super-resolution imaging of Escherichia coli chromosomes reveals asymmetric replication and segregation. J. Struct Biol. 185, 243-249.

76.   Klehs, K.; Spahn, C.; Endesfelder, U.; Lee, S. L.; Fürstenberg, A. & Heilemann, M.# (2013). Increasing the brightness of carbocyanine fluorophores. ChemPhysChem 15, 637-641.

75.     Dietz, M.; Fricke, F.; Krüger, C.; Niemann, H. H. & Heilemann, M.# (2013). Receptor-ligand interactions: binding affinities studied with single-molecule and super-resolution microscopy on intact cells. ChemPhysChem 15, 671-676.


74.     Sroka, R.; Pongratz, T.; Siegrist, K.; Burgmeier, C.; Barth, H.D.; Schmedt, C.G. (2013). Endovenous laser application strategies to improve endoluminal energy application. Phlebologie 42(3), 121-129

73.     Flottmann, B.; Gunkel, M.; Lisaukas, T.; Heilemann, M.#; Starkuviene, V.; Reymann, J. & Erfle, H. (2013). Correlative light microscopy for high-content screening. BioTechniques 2013, 55(5), 243–252

72.     Truan, Z.; Börsch, C.; Malkusch, S.; Endesfelder, U.; Munteanu, M.; Hartley, O.; Heilemann, M.# & A. Fürstenberg (2013). Quantitative morphological analysis of arrestin2 clustering upon G protein-coupled receptor stimulation by super-resolution microscopy. J Struct Biol. 2013, 184(2), 329-34.

 71.     Zessin, P.; Krüger, C.; Malkusch, S.; Endesfelder, U. & Heilemann, M.# (2013). A non-linear drift-correction and channel-alignment method for localization microscopy techniques using uniform 3D distributions of fiducial markers. Optical Nanoscopy 2013, 2-4

 70.     Fürstenberg, A. & Heilemann, M.# (2013) Single-molecule localization microscopy – near-molecular spatial resolution in light microscopy with photoswitchable fluorophores. PhysChemChemPhys, 15(36), 14919-30.

69.      Müller, B. & Heilemann, M.(2013) Shedding new light on viruses: super-resolution microscopy for studying human immunodeficiency virus. Trends Microbiol. 2013, 21(10), 522-33.

68.      Endesfelder, U.; Finan, K.; Holden, S. J.; Cook, P. R.; Kapanidis, A. K. & Heilemann, M. # (2013) Nanoscale organization of RNA polymerase in E. coli. Biophys J. 105(1), 172-81.

67.      Dietz, M.; Haße, D.; Ferraris, D. M.; Göhler, A.; Niemann, H. H. & Heilemann, M.# (2013). Single-molecule photobleaching reveals MET receptor dimerization upon ligand binding in intact cells. BMC Biophysics, 6(1), 6.

66.      Sporbert, A.; Cseresnyes, Z.; Heidbreder, M.; Domaing, P.; Hauser, S.; Kaltschmidt, B.; Kaltschmidt, C.; Heilemann, M. & Widera, D. (2013) Simple method for sub-diffraction resolution imaging of cellular structures on standard confocal microscopes by three-photon absorption of quantum dots. PLoS One, 8(5), e64023.

65.      Kechkar, A.; Nair, D.; Heilemann, M.; Choquet, D. & Sibarita, J. B. (2013) Real-time analysis and visualization for single-molecule based super-resolution microscopy. PLoS One, 8(4), e62918.

64.      Muranyi, W.; Malkusch, S.; Müller, B.; Heilemann, M.& Kräusslich, H.-G. (2013) Super-resolution Microscopy Reveals Specific Recruitment of HIV-1 Envelope Proteins to Viral Assembly Sites dependent on the Envelope C-Terminal Tail. PLoS Pathogens 9(2), e1003198.

63.      Finan, K.; Flottmann, B. & Heilemann, M. # (2013) Photoswitchable fluorophores for single-molecule loclization microscopy. Methods in Molecular Biology, 950, 131-151.

62.      Malkusch, S.; Muranyi, W.; Müller, B.; Kräusslich, H.-G. & Heilemann, M.#(2012) Single-molecule, coordinate-based analysis of the morphology of HIV assembly sites with near-molecular spatial resolution. Histochemistry and Cell Biology, 139(1), 173-179


61.      Sibarita, J. B. & Heilemann, M (2012) Targeting, resolving and quantifying cellular structures by single-molecule localization microscopy. EMBO Reports, 13(12), 1043-1045

60.      Dutta, S.; Flottmann, B.; Heilemann, M. & Mokhir, A. (2012) Hybridization and reaction-based, fluorogenic nucleic acid probes. Chemical Communications, 48(77), 9664-6.

59.      Neugart, F.; Widera, D.; Kaltschmidt, B.; Kaltschmidt, C. & Heilemann, M.#(2012) TNF receptor membrane dynamics studied with fluorescence microscopy and spectroscopy. In: Fluorescent Methods to Study Biological Membranes. Springer Series on Fluorescence, Springer: 439–457.

58.      Heidbreder, M.; Zander, C.; Malkusch, S.; Widera, D.; Kaltschmidt, B.; Kaltschmidt, C.; Nair, D.; Choquet, D.; Sibarita, J.-B. & Heilemann, M. # (2012) TNFalpha influences the lateral dynamics of TNF receptor I in living cells. BBA – Molecular Cell Research, 1823(10), 1984-9.

57.      Lando, D.; Endesfelder, U.; Berger, H.; Dunne, P. D.; McColl, J.; Klenerman, D.; Carr, A. M.; Sauer, M.; Allshire, R.; Heilemann, M. # & Laue, E. D. (2012) Quantitative single molecule microscopy reveals that CENP-Acnp1 deposition occurs during G2 in fission yeast. Open Biology, 2, 120078.

56.      Bar-on, D.; Wolter, S.; van de Linde, S.; Heilemann, M.; Nachliel, E.; Gutman, M.; Sauer, M. & Ashery, U. (2012) Super-resolution imaging reveals the internal architecture of nano-sized syntaxin clusters. Journal of Biological Chemistry, 287, 27158-67.

55.      Nangunieri, S.; Flottmann, B.; Horstmann, H.; Heilemann, M. # & Kuner, T. (2012) Three-dimensional, tomographic super-resolution fluorescence imaging of serially sectioned thick samples. Plos ONE, 7, e38098.

54.      Brodehl, A.; Hedde, P. N.; Dieding, M.; Fatima, A.; Walhorn, V.; Gayda, S.; Saric, T.; Klauke, B.; Gummert, J.; Anselmetti, D.; Heilemann, M.; Nienhaus, G. U. & Milting, H. (2012) Molecular insights into filament assembly defects of ARVC-related desmin mutations. Journal of Biological Chemistry, 287, 16047-16057.

53.      Lampe, A.; Haucke, V.; Heilemann, M. & Schmoranzer, J. (2012) Multi-color direct STORM with red emitting carbocyanines. Biology of the Cell, 104, 229-237.

52.      van de Linde, S.; Heilemann, M. & Sauer, M. (2012) Live-cell super-resolution imaging with synthetic fluorophors. Annual Reviews of Physical Chemistry, 63, 519-540.

51.      Löschberger, A.; van de Linde, S.; Dabauvalle, M.-C.; Rieger, B.; Heilemann, M.; Krohne, G. & Sauer, M. (2012) Super-resolution imaging reveals eightfold symmetry of gp210 proteins around the nuclear pore complex and resolves the central channel with nanometer resolution. J Cell Science, 125, 570-575.

50.      Heilemann, M.# (2012) Elucidating Cellular Structures – Superresolution Microscopy. Comprehensive Biophysics, Elsevier.

49.      Zessin, P. J. M.; Finan, K. & Heilemann, M. # (2012) Super-resolution fluorescence imaging of chromosomal DNA using click chemistry. Journal of Structural Biology, 177, 344-348.

48.      Dertinger, T..; Colyer, R.; Vogel, R.; Heilemann, M.; Sauer, M.; Enderlein, J. & Weiss, S.. (2012) Super-resolution optical fluctuation imaging (SOFI). Advances in Experimental Medicine and Biology, 733, 17-21.

47.      Malkusch, S.; Endesfelder, U.; Mondry, J.; Gelléri, Martón; Verveer, P. J. & Heilemann, M. # (2012) Coordinate-based colocalization analysis of single-molecule localization microscopy data. Histochem Cell Biology, 137, 1-10.


46.      Eckhardt, M.; Anders, M.; Muranyi, W.; Heilemann, M.; Krijnse-Locker, J. & Müller, B. (2011) A SNAP-Tagged Derivative of HIV-1 – a Versatile Tool to Study Virus-Cell Interactions. PlosONE, 6(7), e22007.

45.      van de Linde, S.; Löschberger, A.; Klein, T.; Heidbreder, M.; Wolter, S.; Heilemann, M. & Sauer, M. (2011) Direct stochastic optical reconstruction microscopy with standard fluorescent probes. Nature Protocols, 6(7), 991-1009.  

44.      Widera, D.; Heimann, P.; Zander, C.; Imielski, Y.; Heidbreder, M.; Heilemann, M.; Kaltschmidt, C. & Kaltschmidt, B. (2011) Myalinating Schwann Cells can be reprogrammed to multipotency by culture. Stem Cells and Development, 20(12), 2053-2064.

43.      Endesfelder, U.; Malkusch, S.; Flottmann, B.; Mondry, J.; Liguzinski, P.; Verveer, P. J. & Heilemann, M.# (2011) Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging. Molecules, 16, 3106-3118.

42.      Wolter, S.; Endesfelder, U.; van de Linde, S.; Heilemann, M. & Sauer, M. (2011) Measuring localization performance of super-resolution algorithms on very active samples. Optics Express 19(8), 7020-7033.

41.      van de Linde, S.; Krstic, I.; Prisner, T.; Doose, S.; Heilemann, M. & Sauer, M. (2011) Photoinduced formation of stable dye radicals. Photochemical & Photobiological Sciences, 10, 499-506.


40.      Kottke, T.; van de Linde, S.; Sauer, M.; Kakorin, S. & Heilemann, M.# (2010) Identification of the Product of Photoswitching of an Oxazine Fluorophore Using Fourier Transform Infrared Difference Spectroscopy. Physical Chemistry Letters, 1, 3156-3159.

39.      Dertinger, T.; Heilemann, M.#; Vogel, R.; Sauer, M. & Weiss, S. (2010) Superresolution Optical Fluctuation Imaging with Organic Dyes. Angewandte Chemie, 49, 9441-9443.

38.      Zheng, Z.; Nottbohm, C. T.; Turchanin, A.; Muzik, H.;  Beyer, A.; Heilemann, M.; Sauer, M.; Gölzhäuser, M. (2010) Janus nanomembranes: bilaterally functionalized freestanding 1 nm thick carbon membranes. Angewandte Chemie, 49, 8493-8497.

37.      Wombacher, R.; Heidbreder, M.; van de Linde, S.; Sheetz, M. P.; Heilemann, M.#; Cornish, V. W. & Sauer, M. (2010) Live-cell super-resolution imaging of core histones with trimethoprim conjugates. Nature Methods, 7, 717-719.

36.      Uphoff, S.; Holden, S.; Le Reste, L.; van de Linde, S.; Heilemann, M. & Kapanidis, A. N. (2010) Monitoring multiple distances within a single molecule using switchable FRET. Nature Methods, 7, 831-836.

35.      Heidbreder, M.; Endesfelder, U.; van de Linde, S.; Hennig, S.; Widera, D.; Kaltschmidt, B.; Kaltschmidt C. & Heilemann, M.# (2010) Subdiffraction Fluorescence Microscopy of Biomolecular Structure and Distributions with Quantum Dot Triexciton Imaging (QDTI). Biochimica et Biophysica Acta, 1803, 1224-1229.

34.      Hohlbein, J.; Gryte, K.; Heilemann, M. & Kapanidis, A. N. (2010) Surfing on a new wave of single-molecule fluorescence methods. Physics and Biology, 7, 031001.

33.      Heilemann, M.# (2010) Fluorescence microscopy beyond the diffraction limit.  Journal of Biotechnology, 149, 243-251.

32.      van de Linde, S.; Wolter, S.; Heilemann, M.# & Sauer, M. (2010) The effect of photoswitching kinetics and labeling densities on super-resolution fluorescence imaging. Journal of Biotechnology, 149, 260-266.

31.      Nottbohm, C. T.; Sopher, R.; Heilemann, M.; Sauer, M. & Golzhäuser A. (2010) Fluorescently labeled 1 nm thin carbon nanomembranes. Journal of Biotechnology, 149, 267-271.

30.      Endesfelder, U.; van de Linde, S.; Wolter, S.; Sauer, M & Heilemann, M.# (2010) Subdiffraction-Resolution Fluorescence Microscopy of Myosin-Actin Motility. ChemPhysChem, 11, 836-840.

29.      Seefeldt, B; Kasper, R.; Beining, M.; Mattay, J.; Arden-Jacob, J.; Kemnitzer, N.; Drexhage, K. H.; Heilemann, M. & Sauer, M. (2010) Spiropyrans as molecular optical switches. Photochemical & Photobiological Sciences, 9, 213-220.

28.      Lymperopoulos, K.; Crawford, R.; Torella, J. P.; Heilemann, M.; Hwang, L. C.; Holden, S. J. and Kapanidis, A. N. (2010) Single-molecule DNA biosensors for protein and ligand detection. Angewandte Chemie, 49, 1316-1320.

27.      Wolter, S.; Schüttpelz, M.; Tscherepanow, M.; van de Linde, S.; Heilemann, M. & Sauer, M. (2010) Real-time computation for subdiffraction-resolution fluorescence images. Journal of Microscopy, 237(1), 12-22.


26.      Heilemann, M.#; van de Linde, S.; Mukherjee, A. & Sauer, M. (2009) Super-resolution imaging with small organic fluorophores. Angewandte Chemie, 48, 6903-8.

25.      Heilemann, M. & Sauer, M. (2009) Superhochauflösung: Mikroskopie unterhalb des Beugungslimits mit konventionellen Fluoreszenzfarbstoffen. Labor & more, 04-09, 32-34.

24.      Hennig, S.; van de Linde, S.; Heilemann, M. # & Sauer, M. (2009) Quantum dot triexciton imaging with three-dimensional subdiffraction resolution. Nanoletters, 9, 2466-70.

            (highlighted in Nature Materials, 8, 536 (2009))

23.      Heilemann, M.# (2009) Light at the End of the Tunnel. Angewandte Chemie, 48, 3908-10.

22.      Heilemann, M.; Lymperopoulos, K.; Hwang, L. C. & Kapanidis, A. (2009) Single-Molecule FRET-Analysis of protein-DNA complexes. Methods in Molecular Biology, 543, 503-521.

21.      van de Linde, S.; Endesfelder, U.; Mukherjee, A.; Schüttpelz, M.; Wiebusch, G.; Wolter, S.; Heilemann, M.# & Sauer, M. (2009) Multicolor Photoswitching Microscopy for Subdiffraction Resolution Fluorescence Imaging. Photochemical and Photobiological Sciences, 8, 465-469.

20.      Heilemann, M.#; Dedecker, P.; Hofkens, J. & Sauer, M. (2009) Photoswitches: Key Molecules for Subdiffraction-Resolution Fluorescence Imaging and Molecular Quantification. Laser and Photonics Reviews, 3, 180-202.


19.      van de Linde, S.; Kasper, R.; Heilemann, M. # & Sauer, M. (2008) Photoswitching Microscopy with Standard Fluorophores. Applied Phys. B, 93, 725-731.

18.      van de Linde, S.; Sauer, M. & Heilemann, M.# (2008) Subdiffraction-Resolution Fluorescence Imaging of Proteins in the Mitochondrial Inner Membrane with Photoswitchable Fluorophores. Journal of Structural Biology, 164, 250-254.

17.      Heilemann, M.#; van de Linde, S.; Schüttpelz, M.; Kasper, R.; Seefeldt, B.; Mukherjee, A.; Tinnefeld, P. & Sauer, M. (2008) Subdiffraction-Resolution Fluorescence Imaging with Conventional Fluorescent Probes. Angew. Chemie, 47, 6172-6176.

16.      Goodman, R. P.; Heilemann, M.; Doose, S.; Kapanidis, A. N. & Turberfield, A. J. (2008) Reconfigurable, Braced, Three-Dimensional DNA Nanostructures. Nature Nanotechnology 3, 93-96.

15.      Seefeldt, B.; Kasper, R.; Seidel, T.; Tinnefeld, P.; Dietz, K.-J.; Heilemann, M.# & Sauer, M. (2008) Fluorescent Proteins for Single-Molecule Fluorescence Applications. Journal of Biophotonics 1, 74-82.

14.      Vogelsang, J.; Kasper, R.; Steinhauer, C.; Person, B.; Heilemann, M.; Sauer, M. & Tinnefeld, P. (2008). A reducing and oxidizing system minimizes photobleaching and blinking of fluorescent dyes. Angew. Chemie 47, 5465-5469.


13.      Roth, C. M., Heinlein, P. I., Heilemann, M.# & Herten, D. P. (2007). Imaging diffusion in living cells using time-correlated single-photon counting. Anal Chem 79, 7340-5.

12.      Doose, S., Heilemann, M., Michalet, X., Weiss, S. & Kapanidis, A. N. (2007). Periodic acceptor excitation spectroscopy of single molecules. Eur Biophys J 36, 669-74.

11.      Clifford, J. N., Bell, T. D., Tinnefeld, P., Heilemann, M., Melnikov, S. M., Hotta, J., Sliwa, M., Dedecker, P., Sauer, M., Hofkens, J. & Yeow, E. K. (2007). Fluorescence of single molecules in polymer films: sensitivity of blinking to local environment. J Phys Chem B 111, 6987-91.


10.      Sanchez-Mosteiro, G., van Dijk, E. M., Hernando, J., Heilemann, M., Tinnefeld, P., Sauer, M., Koberling, F., Patting, M., Wahl, M., Erdmann, R., van Hulst, N. F. & Garcia-Parajo, M. F. (2006). DNA-based molecular wires: multiple emission pathways of individual constructs. J Phys Chem B 110, 26349-53.

9.         Heilemann, M., Kasper, R., Tinnefeld, P. & Sauer, M. (2006). Dissecting and reducing the heterogeneity of excited-state energy transport in DNA-based photonic wires. J Am Chem Soc 128, 16864-75.


8.         Tinnefeld, P., Heilemann, M. & Sauer, M. (2005). Design of molecular photonic wires based on multistep electronic excitation transfer. Chemphyschem 6, 217-22.

7.         Heinlein, T., Biebricher, A., Schlüter, P., Roth, C. M., Herten, D. P., Wolfrum, J., Heilemann, M., Muller, C., Tinnefeld, P. & Sauer, M. (2005). High-resolution colocalization of single molecules within the resolution gap of far-field microscopy. Chemphyschem 6, 949-55.

6.         Heilemann, M., Margeat, E., Kasper, R., Sauer, M. & Tinnefeld, P. (2005). Carbocyanine dyes as efficient reversible single-molecule optical switch. J Am Chem Soc 127, 3801-6.

2004 and before 

5.         Tinnefeld, P., Buschmann, V., Weston, K. D., Biebricher, A., Herten, D. P., Piestert, O., Heinlein, T., Heilemann, M.& Sauer, M. (2004). How single molecule photophysical studies complement ensemble methods for a better understanding of chromophores and chromophore interactions. Recent Res. Devel. Phys. Chem. 7, 95-125.

 4.         Herten, D. P., Biebricher, A., Heilemann, M., Heinlein, T., Müller, C., Schlüter, P., Tinnefeld, P., Weston, K. D., Sauer, M. & Wolfrum, J. (2004). Optical single molecule techniques for analytical and biological applications. Recent Res. Devel. Applied Phys. 7, 2-24.

3.         Heilemann, M., Tinnefeld, P., Sanchez Mosteiro, G., Garcia Parajo, M., Van Hulst, N. F. & Sauer, M. (2004). Multistep energy transfer in single molecular photonic wires. J Am Chem Soc 126, 6514-5.

            (highlighted in Science, 304, 5675 (2004))

2.         Devos, I., Womes, M., Heilemann, M., Olivier-Fourcade, J., Jumas, J.-C. & Tirado, J. L. (2004). Lithium insertion mechanism in CoSb3 analysed by 121Sb Moessbauer spectrometry, X-ray absorption spectroscopy and electronic structure calculations. J. Mat. Chem. 14, 1759-67.

1.         Heilemann, M., Herten, D. P., Heintzmann, R., Cremer, C., Muller, C., Tinnefeld, P., Weston, K. D., Wolfrum, J. & Sauer, M. (2002). High-resolution colocalization of single dye molecules by fluorescence lifetime imaging microscopy. Anal Chem 74, 3511-7.